Hurray! Fixed Issue 61. This also fixes card copies not working (e.g. Basilisk Collar copied several times with Prototype Portal).

Mage/src/mage/abilities/Abilities.java

@@ -184,6 +184,11 @@ public interface Abilities<T extends Ability> extends List<T>, Serializable {
 	 */
 	public void setSourceId(UUID sourceId);
 
+	/**
+	 * Assigns a new {@link java.util.UUID}
+	 */
+	public void newId();
+	
 	/**
 	 * Searches this set of abilities to see if the ability represented by the abilityId
 	 * is contained within.  Can be used to find usages of singleton abilities.

Mage/src/mage/abilities/AbilitiesImpl.java

@@ -177,6 +177,13 @@ public class AbilitiesImpl<T extends Ability> extends ArrayList<T> implements Ab
 		}
 	}
 
+	@Override
+	public void newId() {
+		for (Ability ability: this) {
+			ability.newId();
+		}
+	}
+
 	@Override
 	public boolean contains(T ability) {
 		for (T test: this) {

Mage/src/mage/abilities/AbilityImpl.java

@@ -121,6 +121,7 @@ public abstract class AbilityImpl<T extends AbilityImpl<T>> implements Ability {
 	@Override
 	public void newId() {
 		this.id = UUID.randomUUID();
+		getEffects().newId();
 	}
 
 	@Override

Mage/src/mage/abilities/effects/Effect.java

@@ -44,6 +44,7 @@ import mage.target.targetpointer.TargetPointer;
 public interface Effect<T extends Effect<T>> extends Serializable {
 
 	public UUID getId();
+	public void newId();
 	public String getText(Mode mode);
 	public boolean apply(Game game, Ability source);
 	public Outcome getOutcome();

Mage/src/mage/abilities/effects/EffectImpl.java

@@ -103,4 +103,9 @@ public abstract class EffectImpl<T extends Effect<T>> implements Effect<T> {
 	public TargetPointer getTargetPointer() {
 		return this.targetPointer;
 	}
+
+	@Override
+	public void newId() {
+		this.id = UUID.randomUUID();
+	}
 }

Mage/src/mage/abilities/effects/Effects.java

@@ -88,4 +88,10 @@ public class Effects extends ArrayList<Effect> {
 		}
 		return total;
 	}
+
+	public void newId() {
+		for (Effect effect: this) {
+			effect.newId();
+		}
+	}
 }

Mage/src/mage/cards/CardImpl.java

@@ -98,6 +98,7 @@ public abstract class CardImpl<T extends CardImpl<T>> extends MageObjectImpl<T>
 	@Override
 	public void assignNewId() {
 		this.objectId = UUID.randomUUID();
+		this.abilities.newId();
 		this.abilities.setSourceId(objectId);
 	}
 

Mage/src/mage/util/functions/CopyFunction.java

@@ -69,7 +69,10 @@ public class CopyFunction implements Function<Card, Card> {
 		target.setExpansionSetCode(source.getExpansionSetCode());
 		target.getAbilities().clear();
 
-		for (Ability ability : source.getAbilities()) {
+		for (Ability ability0 : source.getAbilities()) {
+			Ability ability = ability0.copy();
+			ability.newId();
+			ability.setSourceId(target.getId());
 			target.addAbility(ability);
 		}
 

Mage/src/mage/util/functions/CopyTokenFunction.java

@@ -71,6 +71,7 @@ public class CopyTokenFunction implements Function<Token, Card> {
 
 		for (Ability ability0 : source.getAbilities()) {
 			Ability ability = ability0.copy();
+			ability.newId();
 			ability.setSourceId(target.getId());
 			target.addAbility(ability);
 		}