diff --git a/rebar.config.sample b/rebar.config.sample
index 9870017..ca164fd 100644
--- a/rebar.config.sample
+++ b/rebar.config.sample
@@ -8,18 +8,6 @@
 %% Additional library directories to add to the code path
 {lib_dirs, []}.
 
-%% Command to run before compiling
-{compile_pre_script, "./script.sh"}.
-
-%% Command to run after compiling
-{compile_post_script, "./script.sh"}.
-
-%% Command to run before cleaning
-{clean_pre_script, "./script.sh"}.
-
-%% Command to run after cleaning
-{clean_post_script, "./script.sh"}.
-
 %% == Erlang Compiler ==
 
 %% Erlang files to compile before the rest. Rebar automatically compiles
@@ -54,14 +42,6 @@
 %% more info. Default is `[]'
 {port_envs, []}.
 
-%% Tuple which specifies a pre-compilation script to run, and a filename that
-%% exists as a result of the script running.
-{port_pre_script, {"script.sh", "skipfile"}}.
-
-%% String that specifies a script to run during cleanup. Use this to remove
-%% files/directories created by port_pre_script.
-{port_cleanup_script, "cleanup.sh"}.
-
 %% Custom name of the port driver .so file. Defaults to `<Application>_drv.so'.
 {so_name, "driver.so"}.
 
diff --git a/src/rebar_port_compiler.erl b/src/rebar_port_compiler.erl
index b230af1..a281b29 100644
--- a/src/rebar_port_compiler.erl
+++ b/src/rebar_port_compiler.erl
@@ -182,6 +182,15 @@ run_precompile_hook(Config, Env) ->
         undefined ->
             ok;
         {Script, BypassFileName} ->
+            ?CONSOLE(
+               <<
+                 "WARNING: option deprecated~n"
+                 "Config option 'port_pre_script' has been deprecated "
+                 "in favor of ~n{pre_hooks, [{compile, \"script\"}]}."
+                 "~nskipfile support has also been removed. Add skipfile"
+                 " logic to the~nscript instead.~nFuture builds of rebar"
+                 " will remove the option 'port_pre_script'.~n~n"
+               >>, []),
             case filelib:is_regular(BypassFileName) of
                 false ->
                     ?CONSOLE("Running ~s\n", [Script]),
@@ -198,6 +207,14 @@ run_cleanup_hook(Config) ->
         undefined ->
             ok;
         Script ->
+            ?CONSOLE(
+               <<
+                 "WARNING: option deprecated~n"
+                 "Config option 'port_pre_script' has been deprecated "
+                 "in favor of ~n{post_hooks, [{clean, \"script\"}]}."
+                 "~nFuture builds of rebar will remove the option "
+                 "'port_pre_script'.~n~n"
+               >>, []),
             ?CONSOLE("Running ~s\n", [Script]),
             {ok, _} = rebar_utils:sh(Script, []),
             ok
diff --git a/src/rebar_post_script.erl b/src/rebar_post_script.erl
index c7f2d01..39185a9 100644
--- a/src/rebar_post_script.erl
+++ b/src/rebar_post_script.erl
@@ -51,6 +51,24 @@ execute_post_script(Config, Key) ->
         undefined ->
             ok;
         Script ->
+            deprecated(Key),
             {ok, _} = rebar_utils:sh(Script, []),
             ok
     end.
+
+deprecated(compile_post_script) ->
+    ?CONSOLE(
+       <<
+         "WARNING: option deprecated~n"
+         "Config option 'compile_post_script' has been deprecated in favor"
+         " of ~noption {post_hooks, [{compile, \"script\"}]}.~nFuture builds "
+         "of rebar will remove the option 'compile_post_script'.~n~n"
+       >>, []);
+deprecated(clean_post_script) ->
+    ?CONSOLE(
+       <<
+         "WARNING: option deprecated~n"
+         "Config option 'clean_post_script' has been deprecated in favor"
+         " of ~noption {post_hooks, [{clean, \"script\"}]}.~nFuture builds "
+         "of rebar will remove the option 'clean_post_script'.~n~n"
+       >>, []).
diff --git a/src/rebar_pre_script.erl b/src/rebar_pre_script.erl
index 9097807..b23f469 100644
--- a/src/rebar_pre_script.erl
+++ b/src/rebar_pre_script.erl
@@ -51,6 +51,24 @@ execute_pre_script(Config, Key) ->
         undefined ->
             ok;
         Script ->
+            deprecated(Key),
             {ok, _} = rebar_utils:sh(Script, []),
             ok
     end.
+
+deprecated(compile_pre_script) ->
+    ?CONSOLE(
+       <<
+         "WARNING: option deprecated~n"
+         "Config option 'compile_pre_script' has been deprecated in favor"
+         " of ~n{pre_hooks, [{compile, \"script\"}]}.~nFuture builds of"
+         " rebar will remove the option 'compile_pre_script'.~n~n"
+       >>, []);
+deprecated(clean_pre_script) ->
+    ?CONSOLE(
+       <<
+         "WARNING: option deprecated~n"
+         "Config option 'clean_pre_script' has been deprecated in favor"
+         " of ~n{pre_hooks, [{clean, \"script\"}]}.~nFuture builds of"
+         " rebar will remove the option 'clean_pre_script'.~n~n"
+       >>, []).