dotfiles/.emacs.d/emacs.org

#+TITLE: Emacs Configuration
#+STARTUP: indent

* Startup
** Disable the emacs startup screen.
#+name: startup
#+BEGIN_SRC emacs-lisp
  (setq inhibit-startup-screen +1)
#+END_SRC
* UI
** Powerline
Make the mode line prettier.
#+name: look-and-feel
#+BEGIN_SRC emacs-lisp
  (use-package powerline
    :ensure t
    :config

    (powerline-default-theme))
#+END_SRC
** Nyan-mode
Visualize the current position within the buffer in the modeline with nyancat!
#+name: look-and-feel
#+BEGIN_SRC emacs-lisp
  (use-package nyan-mode
    :ensure t
    :config
    (nyan-mode)
    (nyan-start-animation))
#+END_SRC
** Theme
#+name: look-and-feel
#+BEGIN_SRC emacs-lisp
  (use-package moe-theme
    :ensure t
    :config

    (setq moe-theme-resize-markdown-title '(1.5 1.4 1.3 1.2 1.0 1.0))
    (setq moe-theme-resize-org-title '(1.5 1.4 1.3 1.2 1.1 1.0 1.0 1.0 1.0))
    (setq moe-theme-resize-rst-title '(1.5 1.4 1.3 1.2 1.1 1.0))

    (setq moe-theme-highlight-buffer-id t)
    (moe-theme-set-color 'cyan)
    (powerline-moe-theme)
    (moe-light))

#+END_SRC
** Major mode icons
Display major-mode names as icons in the mode line when possible.
#+name: look-and-feel
#+BEGIN_SRC emacs-lisp
  (use-package mode-icons
    :ensure t
    :config (mode-icons-mode))
#+END_SRC
** Which-Key
Display key binding completions after a delay.
#+name: look-and-feel
#+BEGIN_SRC emacs-lisp
  (use-package which-key
    :ensure t
    :diminish which-key-mode
    :config
    (which-key-setup-side-window-right-bottom)
    (which-key-mode))
#+END_SRC
** Helm
#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package helm
    :ensure t
    :diminish helm-mode
    :bind (("M-x" . helm-M-x)
           ("M-y" . helm-show-kill-ring)
           ("C-x b" . helm-mini)
           ("C-x C-b" . helm-buffers-list)
           ("C-x C-f" . helm-find-files)
           ("C-x C-r" . helm-recentf)
           ("C-x c o" . helm-occur))
    :config (progn
              (require 'helm-config)
              (helm-mode 1)
              (add-hook 'eshell-mode-hook
                        (lambda ()
                          (define-key eshell-mode-map (kbd "TAB") 'helm-esh-pcomplete)
                          (define-key eshell-mode-map (kbd "C-c C-l") 'helm-eshell-history)))))
#+END_SRC
*** helm-descbinds
#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package helm-descbinds
    :ensure t
    :bind (("C-h b" . helm-descbinds)
           ("C-h w" . helm-descbinds)))
#+END_SRC
*** helm-ag
Helm search plugin for [[Ag%20(The%20Silver%20Searcher)][Ag (The Silver Searcher)]]
#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package helm-ag
    :ensure t
    :commands (helm-ag))
#+END_SRC
*** helm-flyspell
#+name: packages
#+begin_src emacs-lisp
  (use-package helm-flyspell
    :ensure t
    :commands helm-flyspell-correct
    :init (eval-after-load 'flyspell
            '(define-key flyspell-mode-map (kbd "C-;") 'helm-flyspell-correct)))
#+end_src
*** helm-swoop

Replace isearch-forward with helm-swoop for a nicer experience.

#+BEGIN_NOTES
Quite usefully, using prefix arguments expands the lines of context
shown around the search results.
#+END_NOTES

#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package helm-swoop
    :ensure t
    :commands (helm-swoop)
    :bind (("C-s" . helm-swoop))
    :config
    ;; Defaults to (lambda () (thing-at-point 'symbol)).
    ;; Setting it to return nil, as I find it tends to be more annoying than useful.
    (setq helm-swoop-pre-input-function (lambda () nil))
    ;; Enable syntax highlighting. It makes it easier for my eyes to
    ;; parse the results, and doesn't seem to slow things down
    ;; measurably.
    (setq helm-swoop-speed-or-color t)
    )
#+END_SRC
** Undo-Tree

Visualize and traverse undo history as a directed graph.

#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package undo-tree
    :ensure t
    :diminish undo-tree-mode
    :config (global-undo-tree-mode))
#+END_SRC
* Coding
** Languages
*** Lisps
#+name: lisps
| Mode       | Description               |
|------------+---------------------------|
| lisp       | Common Lisp               |
| emacs-lisp | Emacs Lisp                |
| scheme     | Scheme                    |
| lfe        | Lisp-Flavored Erlang      |
| clojure    | Clojure                   |
| hy         | Hy (Lisp-flavored Python) |

#+name: programming
#+BEGIN_SRC emacs-lisp :noweb yes
  ;; SLIME
  (if (file-exists-p "~/quicklisp/slime-helper.el")
      (load (expand-file-name "~/quicklisp/slime-helper.el")))

  (setq inferior-lisp-program "clisp")

  (use-package paredit
    :ensure t
    :commands (paredit-mode)
    :diminish " ❨❩")

  (use-package rainbow-identifiers
    :ensure t
    :commands (rainbow-identifiers-mode))

  (use-package rainbow-delimiters
    :ensure t
    :commands (rainbow-delimiters-mode))

  (let ((lisp-mode-hooks
         (mapcar (lambda (lisp)
                   (intern (concat lisp "-mode-hook")))
                 (mapcar 'car (cddr '<<lisps()>>)))))
    (mapc (lambda (hook)
            (message (format "Installing LISP mode hook for %S" hook))
            (add-hook hook (lambda ()
                             (show-paren-mode t)
                             (electric-indent-mode t)
                             (paredit-mode t)
                             (rainbow-delimiters-mode t)
                             (rainbow-identifiers-mode t))))
          (cons 'eval-expression-minibuffer-setup-hook
                lisp-mode-hooks)))
#+END_SRC
**** Lisp-Flavored Erlang
#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package lfe-mode
    :ensure t
    :mode "\\.lfe$")
#+END_SRC
**** Clojure
#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package clojure-mode
    :ensure t
    :mode (("\\.clj[sx]?$" . clojure-mode)
           ("\\.edn$" . clojure-mode)))
#+END_SRC
***** Cider
Communicates with the clojure REPL.
#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package cider
    :ensure t
    :commands (cider-jack-in cider)
    :config (setq org-babel-clojure-backend 'cider))
#+END_SRC
**** Hy
#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package hy-mode
    :ensure t
    :mode "\\.hy$")
#+END_SRC
*** Erlang
A distributed, fault-tolerant functional language.
#+name: programming
#+BEGIN_SRC emacs-lisp
    (use-package erlang
      :ensure t
      :mode ("\.[eh]rl$" . erlang-mode)
      :config (add-hook 'erlang-mode-hook
                        (lambda ()
                          (setq inferior-erlang-machine-options '("-sname" "emacs"
                                                                  "-hidden")))))
#+END_SRC
*** Elixir
Ruby-flavoured Erlang.
#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package elixir-mode
    :ensure t
    :mode "\\.exs?$")

  (use-package alchemist
    :ensure t)

  (use-package ob-elixir
    :ensure t)
#+END_SRC
*** Haskell
A strongly typed, pure functional language.
#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package haskell-mode
    :ensure t
    :mode "\.hs$")

  (use-package hi2
    :ensure t
    :commands turn-on-hi2
    :init (add-hook 'haskell-mode-hook 'turn-on-hi2))
#+END_SRC
*** Elm
A functional, reactive language for the web that compiles to
JavaScript.

#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package elm-mode
    :ensure t
    :mode "\.elm$"
    :config
    (add-hook 'elm-mode-hook #'elm-oracle-setup-completion)
    (add-to-list 'company-backends 'company-elm))

#+END_SRC
*** Web
**** HTML
#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package web-mode
    :ensure t
    :mode "\\.html?$")
#+END_SRC
**** SCSS
#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package scss-mode
    :ensure t
    :mode "\\.scss$"
    :config (add-hook 'scss-mode-hook
                      (lambda ()
                        "Customize SCSS indentation"
                        (setq css-indent-offset 2))))
#+END_SRC
*** JavaScript
#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package js2-mode
    :ensure t
    :mode ".js$")
#+END_SRC
*** PHP
#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package php-mode
    :ensure t
    :mode (("\\.php$" . php-mode)
           ("\\.inc$" . php-mode))
    :config (add-hook 'php-mode-hook (lambda ()
                                       "Customize PHP indentation"
                                       (c-set-offset 'arglist-cont-nonempty 'c-lineup-arglist)
                                       (c-set-offset 'substatement-open 0)
                                       (c-set-offset 'case-label '+))))
#+END_SRC
*** Python
#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package python-mode
    :ensure t
    :mode "\.py$")
#+END_SRC
**** Elpy

Full functionality requires a number of python packages to be
installed:

#+BEGIN_SRC sh :exports code
  # Either of these
  pip install rope
  pip install jedi
  # flake8 for code checks
  pip install flake8
  # importmagic for automatic imports
  pip install importmagic
  # and autopep8 for automatic PEP8 formatting
  pip install autopep8
  # and yapf for code formatting
  pip install yapf
#+END_SRC

#+name: programming
#+BEGIN_SRC emacs-lisp
  (add-to-list 'package-archives
               '("elpy" . "https://jorgenschaefer.github.io/packages/"))

  (use-package elpy
    :ensure t
    :after python-mode
    :config (elpy-enable))
#+END_SRC
**** Cython
#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package cython-mode
    :ensure t
    :mode "\.pyx$")
#+END_SRC
**** Company-Jedi
Configure jedi and company-mode to provide auto-completion for python.
#+name: programming
#+begin_src emacs-lisp
  (use-package jedi
    :ensure t
    :commands jedi:setup
    :config (progn
              (setq jedi:use-shortcuts t)
              (jedi:install-server)))

  (use-package pungi
    :ensure t
    :commands pungi:setup-jedi
    :init (add-hook #'python-mode-hook
                    (lambda ()
                      (when buffer-file-name
                        #'pungi:setup-jedi))))

  (use-package company-jedi
    :ensure t
    :config (progn
              (defun my/enable-company-jedi ()
                (when buffer-file-name
                  (add-to-list 'company-backends 'company-jedi)))
              (add-hook #'python-mode-hook
                        #'my/enable-company-jedi)))
#+end_src

*** Ruby
#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package rvm
    :ensure t
    :commands (rvm-use
               rvm-use-default))
#+END_SRC
*** Yaml
#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package yaml-mode
    :ensure t
    :mode "\.yml$")
#+END_SRC
*** Docker
#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package dockerfile-mode
    :ensure t
    :mode "^Dockerfile$")
#+END_SRC
*** Graphviz
#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package graphviz-dot-mode
    :ensure t
    :mode "\.dot$")
#+END_SRC
*** Gnuplot
#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package gnuplot
    :ensure t)
#+END_SRC
*** PlantUML

#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package plantuml-mode
    :ensure t
    :mode "\\.plantuml\\'"
    :commands plantuml-mode)
#+END_SRC

Don't forget to configure =org-plantuml-jar-path= and
=plantuml-jar-path= to point to a version of plantuml.jar on your
system.
** Tools
*** Projectile
#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package projectile
    :ensure t
    :diminish " 📁"
    :init
    (use-package helm-projectile
      :ensure t
      :config (helm-projectile-on))
    :config
    (projectile-mode t))
#+END_SRC
*** Autocomplete
**** Company

Install and configure Company for auto-completion.

#+name: autocomplete
#+BEGIN_SRC emacs-lisp
  (use-package company
    :ensure t
    :commands (company-mode)
    :config (progn
              (add-hook 'prog-mode-hook 'company-mode)

              (bind-key "C-n" #'company-select-next company-active-map)
              (bind-key "C-p" #'company-select-previous company-active-map)))
#+END_SRC
**** Auto-Complete

Not using this for auto-completion anymore, but several packages
require it.

#+name: autocomplete
#+begin_src emacs-lisp
  (use-package auto-complete
    :ensure t
    :defer t)
#+end_src

*** Flycheck
#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package flycheck
    :ensure t
    :diminish " ✓"
    :init
    (add-hook 'after-init-hook #'global-flycheck-mode))
#+END_SRC
*** Web Mode
#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package web-mode
    :ensure t
    :mode ("\\.html$" . web-mode)
    :config (add-hook 'web-mode-hook (lambda ()
                                       (setq web-mode-markup-indent-offset 4)
                                       (setq web-mode-css-indent-offset 4)
                                       (setq web-mode-code-indent-offset 4))))
#+END_SRC
*** Skewer
Live web development in Emacs.

#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package skewer-mode
    :ensure t
    :commands (run-skewer
               skewer-mode
               skewer-css-mode
               skewer-html-mode)
    :init (progn (add-hook 'js2-mode-hook 'skewer-mode)
                 (add-hook 'css-mode-hook 'skewer-css-mode)
                 (add-hook 'html-mode-hook 'skewer-html-mode)))
#+END_SRC
*** Yasnippet
#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package yasnippet
    :ensure t
    :diminish yas-minor-mode
    :config (yas-global-mode 1))
#+END_SRC
*** Ag (The Silver Searcher)
This is a code searching tool that replaces =ack=, and is an order of
magnitude faster.

#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package ag
    :ensure t
    :commands (ag))
#+END_SRC
*** Expand Region
Increase selected region by semantic units.

#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package expand-region
    :ensure t
    :bind (("C-=" . er/expand-region)))
#+END_SRC
** Libraries
*** Dash
A modern list api for Emacs. No 'cl required.

#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package dash
    :ensure t
    :config (dash-enable-font-lock))
#+END_SRC
*** Stream

Lazy sequences in Emacs (compatible with seq.el).

#+name: programming
#+BEGIN_SRC emacs-lisp
  (use-package stream
    :ensure t
    :if (version<= "25.1" emacs-version)
    :defer t)
#+END_SRC
* Writing
** Style
*** End sentences with a single space
#+name: packages
#+BEGIN_SRC emacs-lisp
  (setq sentence-end-double-space nil)
#+END_SRC
** Formats
*** Org
**** Modules
#+name: org-module-table
| org-habit |

#+name: packages
#+BEGIN_SRC emacs-lisp :noweb yes
  (let ((modules (mapcar (lambda (m) (intern (car m)))
                         '<<org-module-table()>>)))
    (mapcar (lambda (m) (add-to-list 'org-modules m))
            modules))
  (org-load-modules-maybe t)
#+END_SRC
**** Tasks
***** Enforce dependencies
Require child tasks and checkboxes to be done before a parent task can
be marked done.
#+BEGIN_SRC emacs-lisp
  (setq
   org-enforce-todo-dependencies t
   org-enforce-todo-checkbox-dependencies t)
#+END_SRC
***** Keep logs in their own drawer
#+name: packages
#+BEGIN_SRC emacs-lisp
  (setq org-log-into-drawer t)
#+END_SRC
***** Log completion
#+name: packages
#+BEGIN_SRC emacs-lisp
  (setq org-log-done 'time)
#+END_SRC
***** Habits
Shift the consistency graph over a bit to make room for task
names.
#+name: packages
#+BEGIN_SRC emacs-lisp
  (setq org-habit-graph-column 70)
  (setq org-habit-show-habits-only-for-today nil)
#+END_SRC
**** Refiling
#+BEGIN_SRC emacs-lisp
  (setq org-refile-targets '((org-agenda-files . (:maxlevel . 6))))
#+END_SRC
**** Babel
***** Syntax highlighting
#+name: packages
#+BEGIN_SRC emacs-lisp
  (setq-default org-src-fontify-natively t)
#+END_SRC
***** HTTP
#+name: packages
#+begin_src emacs-lisp
  (use-package ob-http
    :ensure t
    :defer t)
#+end_src
***** Language evaluation

Org-babel evaluation will be turned on for the following
languages. Setting ~Confirm Evaluation~ to ~No~ disables the
[[http://orgmode.org/manual/Code-evaluation-security.html][security prompt]] for that language.

#+name: org-babel-languages
| Language     | Alias | Confirm Evaluation? | Description                     |
|--------------+-------+---------------------+---------------------------------|
| emacs-lisp   |       | Yes                 | Emacs Lisp                      |
| graphviz-dot | dot   | No                  | Directed and undirected graphs  |
| gnuplot      |       | No                  | Graphs                          |
| ditaa        |       | No                  | Ascii diagrams                  |
| plantuml     |       | No                  | Flow charts                     |
| mscgen       |       | No                  | Message sequence charts         |
| haskell      |       | Yes                 | A pure, functional language     |
| python       |       | Yes                 | A dynamic, all-purpose language |
| ruby         |       | Yes                 | A dynamic, all-purpose language |
| shell        |       | Yes                 | Shell scripts                   |
| http         |       | No                  | HTTP requests                   |
| sql          |       | No                  | SQL Queries                     |
| ledger       |       | No                  | Double-Entry Accounting         |

#+name: packages
#+BEGIN_SRC emacs-lisp :noweb yes
  (defvar my/org-babel-evaluated-languages ())
  (defvar my/org-src-lang-modes ())
  (defvar my/org-babel-no-confirm-languages ())

  (defun my/org-confirm-babel-evaluate (lang body)
    (not (member (intern lang) my/org-babel-no-confirm-languages)))

  (let ((language-table (cddr '<<org-babel-languages()>>)))
    (mapcar (lambda (lang-pair)
              (let* ((alias (if (not (string= (cadr lang-pair) "")) (cadr lang-pair)))
                     (lang (intern (car lang-pair)))
                     (lang-or-alias (if alias (intern alias) lang))
                     (confirm (not (string= (cl-caddr lang-pair) "No"))))
                (if alias
                    (add-to-list 'my/org-src-lang-modes (cons alias lang)))
                (if (not confirm)
                    (add-to-list 'my/org-babel-no-confirm-languages lang-or-alias))
                (add-to-list 'my/org-babel-evaluated-languages lang-or-alias)
                lang-or-alias))
            language-table))

  (mapcar (lambda (alias)
            (add-to-list 'org-src-lang-modes alias))
          my/org-src-lang-modes)

  (org-babel-do-load-languages
   'org-babel-load-languages
   (mapcar (lambda (lang)
             (cons lang t))
           my/org-babel-evaluated-languages))

  (setq org-confirm-babel-evaluate 'my/org-confirm-babel-evaluate)
#+END_SRC
***** Reload images on source execution
#+name: packages
#+begin_src emacs-lisp
  (defun my/redisplay-org-images ()
    (when org-inline-image-overlays
      (org-redisplay-inline-images)))

  (add-hook 'org-babel-after-execute-hook
            'my/redisplay-org-images)
#+end_src
**** Wrap text in blocks
A useful snippet for marking a region and wrapping it in an org block.

Taken from [[http://pragmaticemacs.com/emacs/wrap-text-in-an-org-mode-block/][Pragmatic Emacs]]
#+name: packages
#+BEGIN_SRC emacs-lisp
  ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
  ;; function to wrap blocks of text in org templates                       ;;
  ;; e.g. latex or src etc                                                  ;;
  ;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;;
  (defun org-begin-template ()
    "Make a template at point."
    (interactive)
    (if (org-at-table-p)
        (call-interactively 'org-table-rotate-recalc-marks)
      (let* ((choices '(("s" . "SRC")
                        ("e" . "EXAMPLE")
                        ("q" . "QUOTE")
                        ("v" . "VERSE")
                        ("c" . "CENTER")
                        ("l" . "LaTeX")
                        ("h" . "HTML")
                        ("a" . "ASCII")))
             (key
              (key-description
               (vector
                (read-key
                 (concat (propertize "Template type: " 'face 'minibuffer-prompt)
                         (mapconcat (lambda (choice)
                                      (concat (propertize (car choice) 'face 'font-lock-type-face)
                                              ": "
                                              (cdr choice)))
                                    choices
                                    ", ")))))))
        (let ((result (assoc key choices)))
          (when result
            (let ((choice (cdr result)))
              (cond
               ((region-active-p)
                (let ((start (region-beginning))
                      (end (region-end)))
                  (goto-char end)
                  (insert "#+END_" choice "\n")
                  (goto-char start)
                  (insert "#+BEGIN_" choice "\n")))
               (t
                (insert "#+BEGIN_" choice "\n")
                (save-excursion (insert "#+END_" choice))))))))))

  ;;bind to key
  (define-key org-mode-map (kbd "C-<") 'org-begin-template)
#+END_SRC
**** Complete keywords with Company
Taken from https://emacs.stackexchange.com/a/30691.

#+name: packages
#+BEGIN_SRC emacs-lisp
  (defun org-keyword-backend (command &optional arg &rest ignored)
    (interactive (list 'interactive))
    (cl-case command
      (interactive (company-begin-backend 'org-keyword-backend))
      (prefix (and (eq major-mode 'org-mode)
                   (cons (company-grab-line "^#\\+\\(\\w*\\)" 1)
                         t)))
      (candidates (mapcar #'upcase
                          (cl-remove-if-not
                           (lambda (c) (string-prefix-p arg c))
                           (pcomplete-completions))))
      (ignore-case t)
      (duplicates t)))

  (add-to-list 'company-backends 'org-keyword-backend)
  (add-hook 'org-mode-hook 'company-mode)
#+END_SRC
**** Exporting
***** LaTeX
#+name: packages
#+BEGIN_SRC emacs-lisp :noweb yes
  (use-package ox-latex
    :defer t
    :config
    <<configure-ox-latex>>)
#+END_SRC

****** Document classes

Add org latex class definitions for some popular LaTeX classes,
including:
- [[HTTPS://ctan.org/pkg/koma-script?lang=en][KOMA-Script]]
- [[https://ctan.org/pkg/memoir?lang=en][Memoir]]
- [[https://ctan.org/pkg/hitec?lang=en][Hitec]]
- [[https://ctan.org/pkg/tufte-latex?lang=en][Tufte]]
- [[https://ctan.org/pkg/labbook?lang=en][Labbook]] (based on KOMA-Script)

#+name: configure-ox-latex
#+BEGIN_SRC emacs-lisp
  (seq-map (apply-partially #'add-to-list 'org-latex-classes)
           '(("koma-letter"
              "\\documentclass{scrlttr2}"
              ("\\section{%s}" . "\\section*{%s}")
              ("\\subsection{%s}" . "\\subsection*{%s}")
              ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
              ("\\paragraph{%s}" . "\\paragraph*{%s}")
              ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))
             ("koma-article"
              "\\documentclass{scrartcl}"
              ("\\section{%s}" . "\\section*{%s}")
              ("\\subsection{%s}" . "\\subsection*{%s}")
              ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
              ("\\paragraph{%s}" . "\\paragraph*{%s}")
              ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))
             ("koma-book"
              "\\documentclass{scrbook}"
              ("\\section{%s}" . "\\section*{%s}")
              ("\\subsection{%s}" . "\\subsection*{%s}")
              ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
              ("\\paragraph{%s}" . "\\paragraph*{%s}")
              ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))
             ("koma-book-chapters"
              "\\documentclass{scrbook}"
              ("\\chapter{%s}" . "\\chapter*{%s}")
              ("\\section{%s}" . "\\section*{%s}")
              ("\\subsection{%s}" . "\\subsection*{%s}")
              ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
              ("\\paragraph{%s}" . "\\paragraph*{%s}")
              ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))
             ("koma-report"
              "\\documentclass{scrreprt}"
              ("\\chapter{%s}" . "\\chapter*{%s}")
              ("\\section{%s}" . "\\section*{%s}")
              ("\\subsection{%s}" . "\\subsection*{%s}")
              ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
              ("\\paragraph{%s}" . "\\paragraph*{%s}")
              ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))
             ("memoir"
              "\\documentclass{memoir}"
              ("\\section{%s}" . "\\section*{%s}")
              ("\\subsection{%s}" . "\\subsection*{%s}")
              ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
              ("\\paragraph{%s}" . "\\paragraph*{%s}")
              ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))
             ("hitec"
              "\\documentclass{hitec}"
              ("\\section{%s}" . "\\section*{%s}")
              ("\\subsection{%s}" . "\\subsection*{%s}")
              ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
              ("\\paragraph{%s}" . "\\paragraph*{%s}")
              ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))
             ("paper"
              "\\documentclass{paper}"
              ("\\section{%s}" . "\\section*{%s}")
              ("\\subsection{%s}" . "\\subsection*{%s}")
              ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
              ("\\paragraph{%s}" . "\\paragraph*{%s}")
              ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))
             ("letter"
              "\\documentclass{letter}"
              ("\\section{%s}" . "\\section*{%s}")
              ("\\subsection{%s}" . "\\subsection*{%s}")
              ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
              ("\\paragraph{%s}" . "\\paragraph*{%s}")
              ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))
             ("tufte-handout"
              "\\documentclass{tufte-handout}"
              ("\\section{%s}" . "\\section*{%s}")
              ("\\subsection{%s}" . "\\subsection*{%s}")
              ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
              ("\\paragraph{%s}" . "\\paragraph*{%s}")
              ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))
             ("tufte-book"
              "\\documentclass{tufte-book}"
              ("\\section{%s}" . "\\section*{%s}")
              ("\\subsection{%s}" . "\\subsection*{%s}")
              ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
              ("\\paragraph{%s}" . "\\paragraph*{%s}")
              ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))
             ("tufte-book-chapters"
              "\\documentclass{tufte-book}"
              ("\\chapter{%s}" . "\\chapter*{%s}")
              ("\\section{%s}" . "\\section*{%s}")
              ("\\subsection{%s}" . "\\subsection*{%s}")
              ("\\subsubsection{%s}" . "\\subsubsection*{%s}")
              ("\\paragraph{%s}" . "\\paragraph*{%s}")
              ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))
             ("labbook"
              "\\documentclass{labbook}"
              ("\\chapter{%s}" . "\\chapter*{%s}")
              ("\\section{%s}" . "\\section*{%s}")
              ("\\subsection{%s}" . "\\labday{%s}")
              ("\\subsubsection{%s}" . "\\experiment{%s}")
              ("\\paragraph{%s}" . "\\paragraph*{%s}")
              ("\\subparagraph{%s}" . "\\subparagraph*{%s}"))))
#+END_SRC
****** Source Highlighting

Configure org-mode LaTeX export to use minted for syntax highlighting.

Some languages / markups I use aren't supported by minted, so I map
them here so they don't fail.

#+name: ox-latex-minted-mappings
#+CAPTION: Minted language mappings
| Language | Mapping      |
|----------+--------------|
| dot      | text         |
| org      | text         |
| ditaa    | text         |
| plantuml | text         |
| csv      | text         |
| conf     | linux-config |

#+name: configure-ox-latex
#+BEGIN_SRC emacs-lisp :noweb yes
  (setq org-latex-listings 'minted)
  (setq org-latex-minted-options
        '(("fontsize" "\\scriptsize")))
  (seq-map (lambda (mapping)
             (add-to-list 'org-latex-minted-langs
                          (cons (intern (car mapping)) (cdr mapping))))
           (seq-drop '<<ox-latex-minted-mappings()>> 2))
  (add-to-list 'org-latex-packages-alist
               '("" "minted" nil))
#+END_SRC
****** TeX Engine

Prepare the LaTeX export process, and default the compiler to xelatex,
as it has better unicode support than pdflatex.

#+BEGIN_NOTES
The =%latex= expansion variable is used so that org documents can
override the latex compiler using the file-level =LATEX_COMPILER=
directive.
#+END_NOTES

#+name: configure-ox-latex
#+BEGIN_SRC emacs-lisp
  (setq org-latex-pdf-process
        (-repeat 3 "%latex -shell-escape -interaction nonstopmode -output-directory %o %f"))

  ;; Default to XeLaTeX
  (setq org-latex-compiler "xelatex")

#+END_SRC
*** LaTeX
**** AUCTeX
#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package tex-site
    :ensure auctex
    :mode ("\\.tex$" . TeX-latex-mode))
#+END_SRC
**** LaTeX-Extra
#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package latex-extra
    :ensure t
    :diminish latex-extra-mode
    :commands latex-extra-mode
    :init (add-hook 'LaTeX-mode-hook #'latex-extra-mode))
#+END_SRC
*** Markdown
#+name: packages
#+begin_src emacs-lisp
  (use-package markdown-mode
    :ensure t
    :mode "\\.md$")
#+end_src
** Tools
*** Flyspell
#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package flyspell
    :ensure t
    :commands flyspell-mode
    :diminish flyspell-mode
    :init (mapcar (lambda (mode-hook)
                    (add-to-list mode-hook #'flyspell-mode))
                  '(text-mode-hook
                    org-mode-hook)))
#+END_SRC
*** Auto-Fill
Automatically wrap paragraphs while writing in text modes.

#+name: packages
#+BEGIN_SRC emacs-lisp
  (mapcar (lambda (mode-hook)
            (add-hook mode-hook #'auto-fill-mode))
          '(text-mode-hook
            org-mode-hook))
#+END_SRC
*** Unfill
Re-flowing paragraphs with =fill-paragraph= is nice, but there are
occasions when it's useful to do the inverse, and get rid of the line
breaks.

#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package unfill
    :ensure t
    :commands (unfill-paragraph
               unfill-region)
    :bind ("M-Q" . unfill-paragraph))
#+END_SRC
*** Writegood
#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package writegood-mode
   :ensure t
   :commands writegood-mode
   :diminish writegood-mode
   :init (mapcar (lambda (mode-hook)
                   (add-hook mode-hook #'writegood-mode))
                 '(text-mode-hook
                   org-mode-hook)))

#+END_SRC
* Mail
** Gnus
#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package gnus
    :commands gnus
    :init (progn (defun my/configure-gnus ()
                     <<gnus>>
                     )
                   (setq gnus-before-startup-hook 'my/configure-gnus)))
#+END_SRC
*** Avoid rich-text messages
#+name: gnus
#+BEGIN_SRC emacs-lisp
  (setq mm-discouraged-alternatives '("text/html" "text/richtext"))
#+END_SRC
*** Summary view formatting
Taken from http://groups.google.com/group/gnu.emacs.gnus/browse_thread/thread/a673a74356e7141f

#+name: gnus
#+BEGIN_SRC emacs-lisp
  (when window-system
    (setq gnus-sum-thread-tree-indent "  ")
    (setq gnus-sum-thread-tree-root "") ;; "● ")
    (setq gnus-sum-thread-tree-false-root "") ;; "◯ ")
    (setq gnus-sum-thread-tree-single-indent "") ;; "◎ ")
    (setq gnus-sum-thread-tree-vertical        "│")
    (setq gnus-sum-thread-tree-leaf-with-other "├─► ")
    (setq gnus-sum-thread-tree-single-leaf     "╰─► "))
  (setq gnus-summary-line-format
        (concat
         "%0{%U%R%z%}"
         "%3{│%}" "%1{%d%}" "%3{│%}" ;; date
         "  "
         "%4{%-20,20f%}"               ;; name
         "  "
         "%3{│%}"
         " "
         "%1{%B%}"
         "%s\n"))
  (setq gnus-summary-display-arrow t)
#+END_SRC
*** Inline images
#+name: gnus
#+BEGIN_SRC emacs-lisp
  (require 'mm-decode)

  (add-to-list 'mm-attachment-override-types "image/.*")
  (setq mm-inline-large-images t)
#+END_SRC
* Publishing
** Htmlize
#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package htmlize
    :ensure t
    :commands (htmlize-region htmlize-buffer htmlize-file))
#+END_SRC
* Source Control
** Git-Gutter
#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package git-gutter
    :ensure t
    :diminish git-gutter-mode
    :bind (("C-x g n" . git-gutter:next-hunk)
           ("C-x g p" . git-gutter:previous-hunk))
    :defer 1
    :config
    (progn
      (global-git-gutter-mode t)
      (defadvice ediff-make-temp-file (before make-temp-file-suspend-ll
                                              activate compile preactivate)
        "Disable git-gutter when running ediff"
        (global-git-gutter-mode 0))

      (add-hook 'ediff-cleanup-hook
                '(lambda ()
                   (global-git-gutter-mode t)))))
#+END_SRC
** Magit
#+name: packages
#+BEGIN_SRC emacs-lisp
  (use-package magit
    :ensure t
    :commands (magit-init
               magit-status
               magit-diff
               magit-commit)
    :bind (("C-c m s" . magit-status)
           ("C-c m d" . magit-diff)
           ("C-c m c" . magit-commit)
           ("C-c m l l" . magit-log-head)
           ("C-c m l b" . magit-log-buffer-file)
           ("C-c m l r" . magit-reflog-head))
    :config
    (progn
      (defadvice magit-status (around magit-fullscreen activate)
        (window-configuration-to-register :magit-fullscreen)
        ad-do-it
        (delete-other-windows))

      (defadvice magit-quit-window (around magit-restore-screen activate)
        ad-do-it
        (jump-to-register :magit-fullscreen))))

  (use-package magit-blame
    :ensure magit
    :commands magit-blame-mode
    :bind ("C-c m b" . magit-blame))
#+END_SRC
* Other functionality
** Disable tab indenting by default
#+name: other
#+BEGIN_SRC emacs-lisp
  (setq-default indent-tabs-mode nil)
#+END_SRC
** Rename file and buffer
Taken from [[http://emacsredux.com/blog/2013/05/04/rename-file-and-buffer/][Emacs Redux]]
#+name: other
#+BEGIN_SRC emacs-lisp
  ;; emacsredux.com
  (defun rename-file-and-buffer ()
    "Rename the current buffer and file it is visiting."
    (interactive)
    (let ((filename (buffer-file-name)))
      (if (not (and filename (file-exists-p filename)))
          (message "Buffer is not visiting a file!")
        (let ((new-name (read-file-name "New name: " filename)))
          (cond
           ((vc-backend filename) (vc-rename-file filename new-name))
           (t
            (rename-file filename new-name t)
            (rename-buffer new-name)
            (set-visited-file-name new-name)
            (set-buffer-modified-p nil)))))))
#+END_SRC
** Eval and Replace
Taken from [[http://emacsredux.com/blog/2013/06/21/eval-and-replace/][Emacs Redux]]
#+name: other
#+BEGIN_SRC emacs-lisp
  (defun eval-and-replace ()
    "Replace the preceding sexp with its value."
    (interactive)
    (backward-kill-sexp)
    (condition-case nil
        (prin1 (eval (read (current-kill 0)))
               (current-buffer))
      (error (message "Invalid expression")
             (insert (current-kill 0)))))

  (global-set-key (kbd "C-)") 'eval-and-replace)
#+END_SRC
** Smarter navigation to the beginning of a line
Taken from [[http://emacsredux.com/blog/2013/05/22/smarter-navigation-to-the-beginning-of-a-line/][Emacs Redux]]
#+name: other
#+BEGIN_SRC emacs-lisp
  (defun smarter-move-beginning-of-line (arg)
    "Move point back to indentation of beginning of line.

  Move point to the first non-whitespace character on this line.
  If point is already there, move to the beginning of the line.
  Effectively toggle between the first non-whitespace character and
  the beginning of the line.

  If ARG is not nil or 1, move forward ARG - 1 lines first.  If
  point reaches the beginning or end of the buffer, stop there."
    (interactive "^p")
    (setq arg (or arg 1))

    ;; Move lines first
    (when (/= arg 1)
      (let ((line-move-visual nil))
        (forward-line (1- arg))))

    (let ((orig-point (point)))
      (back-to-indentation)
      (when (= orig-point (point))
        (move-beginning-of-line 1))))

  ;; remap C-a to `smarter-move-beginning-of-line'
  (global-set-key [remap move-beginning-of-line]
                  'smarter-move-beginning-of-line)
#+END_SRC
** Edit file with sudo
Taken from [[http://www.emacswiki.org/TrampMode#toc32][EmacsWiki]]
#+name: other
#+BEGIN_SRC emacs-lisp
  (require 'dired)
  (defun sudo-edit-current-file ()
    (interactive)
    (let ((my-file-name) ; fill this with the file to open
          (position))    ; if the file is already open save position
      (if (equal major-mode 'dired-mode) ; test if we are in dired-mode
          (progn
            (setq my-file-name (dired-get-file-for-visit))
            (find-alternate-file (prepare-tramp-sudo-string my-file-name)))
        (setq my-file-name (buffer-file-name); hopefully anything else is an already opened file
              position (point))
        (find-alternate-file (prepare-tramp-sudo-string my-file-name))
        (goto-char position))))


  (defun prepare-tramp-sudo-string (tempfile)
    (if (file-remote-p tempfile)
        (let ((vec (tramp-dissect-file-name tempfile)))

          (tramp-make-tramp-file-name
           "sudo"
           (tramp-file-name-user nil)
           (tramp-file-name-host vec)
           (tramp-file-name-localname vec)
           (format "ssh:%s@%s|"
                   (tramp-file-name-user vec)
                   (tramp-file-name-host vec))))
      (concat "/sudo:root@localhost:" tempfile)))

  (define-key dired-mode-map [s-return] 'sudo-edit-current-file)
#+END_SRC
** Backups
Borrowed from Sacha Chua
https://github.com/sachac/.emacs.d/

This is one of the things people usually want to change right away. By default, Emacs saves backup files in the current directory. These are the files ending in =~= that are cluttering up your directory lists. The following code stashes them all in =~/.emacs.d/backups=, where I can find them with =C-x C-f= (=find-file=) if I really need to.

#+name: other
#+begin_src emacs-lisp
  (setq backup-directory-alist '(("." . "~/.emacs.d/backups")))
#+end_src

Disk space is cheap. Save lots.

#+name: other
#+begin_src emacs-lisp
  (setq delete-old-versions -1)
  (setq version-control t)
  (setq vc-make-backup-files t)
  (setq auto-save-file-name-transforms '((".*" "~/.emacs.d/auto-save-list/" t)))
#+end_src
** Disable lock files
Lock files have only ever gotten in my way.

#+name: other
#+BEGIN_SRC emacs-lisp
  (setq create-lockfiles nil)
#+END_SRC
** History
From http://www.wisdomandwonder.com/wordpress/wp-content/uploads/2014/03/C3F.html

#+name: other
#+begin_src emacs-lisp
  (setq savehist-file "~/.emacs.d/savehist")
  (savehist-mode 1)
  (setq history-length t)
  (setq history-delete-duplicates t)
  (setq savehist-save-minibuffer-history 1)
  (setq savehist-additional-variables
        '(kill-ring
          search-ring
          regexp-search-ring))
#+end_src
** Copy filename to clipboard

http://emacsredux.com/blog/2013/03/27/copy-filename-to-the-clipboard/
https://github.com/bbatsov/prelude

#+name: other
#+begin_src emacs-lisp
  (defun prelude-copy-file-name-to-clipboard ()
    "Copy the current buffer file name to the clipboard."
    (interactive)
    (let ((filename (if (equal major-mode 'dired-mode)
                        default-directory
                      (buffer-file-name))))
      (when filename
        (kill-new filename)
        (message "Copied buffer file name '%s' to the clipboard." filename))))
#+end_src
** Prompt for 'y or n' instead of 'yes or no'
Because typing out "yes" and "no" is irritating.

#+name: other
#+BEGIN_SRC emacs-lisp
  (defalias 'yes-or-no-p #'y-or-n-p)
#+END_SRC
** Support ANSI colors in compilation buffers

http://stackoverflow.com/a/13408008

#+name: other
#+BEGIN_SRC emacs-lisp
  (require 'ansi-color)
  (defun colorize-compilation-buffer ()
    (toggle-read-only)
    (ansi-color-apply-on-region compilation-filter-start (point))
    (toggle-read-only))
  (add-hook 'compilation-filter-hook 'colorize-compilation-buffer)
#+END_SRC
** Re-bind modifiers on OSX

On mac keyboards, the command key placement works better for me as
Meta rather than the default (Super), because it's right where my
muscle memory expects a PC keyboard's Alt key.

The control keys are typically pretty terrible, too, but I find it
easier to rebind Caps Lock to Control in the system preferences (which
is a nice thing to do in other environments, as well).

#+name: other
#+BEGIN_SRC emacs-lisp
  (when (equal 'darwin system-type)
    ;; Command as meta, because alt/option's placement is terrible on
    ;; mac keyboards (this doesn't interfere with Spotlight's ⌘-Space
    ;; binding)
    (setq ns-command-modifier 'meta))
#+END_SRC
* Custom settings
Store options set via =customize-*= in a separate file (Emacs stores
them in =init.el= by default).

#+name: custom-settings
#+BEGIN_SRC emacs-lisp
  (setq custom-file "~/.emacs.d/custom.el")
  (if (file-exists-p custom-file)
      (load custom-file))
#+END_SRC
* Auto-loading elisp files
Any elisp files dropped into =~/.emacs.local.d/= will be
automatically loaded.

I usually use this is a testing ground for new configuration before
adding it here, and also for any personal / sensitive configuration.

#+name: auto-load
#+BEGIN_SRC emacs-lisp
  (defun my/load-elisp-directory (path)
    (let ((file-pattern "\\.elc?$"))
      (when (file-directory-p path)
        (mapcar (lambda (lisp-file)
                  (load-file lisp-file))
                (directory-files (expand-file-name path) t file-pattern)))))

  (my/load-elisp-directory "~/.emacs.local.d")
#+END_SRC
* Configuration file layout

Here I define the emacs.el file that gets generated by the code in
this org file.

#+BEGIN_SRC emacs-lisp :tangle yes :noweb no-export :exports code
  ;;;; Do not modify this file by hand.  It was automatically generated
  ;;;; from `emacs.org` in the same directory. See that file for more
  ;;;; information.
  ;;;;

  <<startup>>
  <<look-and-feel>>
  <<packages>>
  <<programming>>
  <<autocomplete>>
  <<other>>
  <<auto-load>>
  <<custom-settings>>
#+END_SRC